關於 transfac database ，我們在網路上蒐集到這些相關的討論、資訊與評價

#11. Expanding the TRANSFAC database towards an expert ...

TRANSFAC is a database on transcription factors, their genomic binding sites and DNA-binding profiles. In addition to being updated and extended by new.

#12. TRANSFAC® database and its applications - YouTube

This video is a record of geneXplain's live webseminar " TRANSFAC ® database and its applications", which was held on October 21st, 2020.

#13. a database on transcription factors and their DNA binding ...

PDF | TRANSFAC is a database about eukaryotic transcription regulating DNA sequence elements and the transcription factors binding to and acting through.

#14. TRANSFAC/Match - HSLS MolBio Available Software

TRANSFAC is the database of eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles.

#15. DBGET system: database information

Date Database Release #Entries #Residues -------- ------------- ------------------------ ------------- ---------------- 23/08/10 nr-nt 23-08-09 (Aug 23) ...

#16. TRANSFAC

Database Description. Transcription factors and binding sites. Category Protein Databases. Go to the abstract in the NAR 2001 Database Issue.

#17. Download transfac public database

You can download the Transfac public matrices and much more in the CIS-BP database. Just select Transfac from the evidence type dropdown.

#18. TRANSFAC Motif Format - MEME Suite

The TRANScription FACtor database is a manually curated set of motifs managed by the company BIOBASE. The most up-to-date version of the TRANSFAC database ...

#19. TRANSFAC Retrieval Program: A Network Model

Database of Eukaryotic Transcription Regulating. Sequences and Proteins ... In this paper, we presentthe TRANSFAC database that contains an.

#20. TRANSFAC - Yale Medical Library

TRANSFAC is a knowledge-base containing published data on eukaryotic transcription factors (and miRNAs), their experimentally-proven binding sites, ...

#21. TRANSFAC 3.2 database

On the TRANSFAC server, you will find also the sequence analysis ... TRANSFAC is a database about eukaryotic transcription factors and their ...

#22. JASPAR - A database of transcription factor binding profiles

The prime difference to similar resources (TRANSFAC, etc.) consist of the open data access, non-redundancy and quality. When should it be used? When seeking ...

#23. The TRANSFAC project

That compilation anticipated already the later core structure of the TRANSFAC database in arranging the feature of binding sites and the ...

#24. TRANSFAC in SearchWorks catalog - Stanford Libraries

Summary: "TRANSFAC is a database containing published data on eukaryotic transcription factors and miRNAs, their experimentally-proven binding sites, ...

#25. TRANSFAC® release 2020.3

The TRANSFAC® database on transcription factors, their genomic binding sites and DNA-binding motifs. (PWMs), contains these new data features:.

#26. TRANSFAC system

In short, TRANSFAC is a database on transcriptional regu- lation. It provides information about transcription factors, their genomic binding sites, and their ...

#27. Biobase to Add SNPs to Transfac Database

NEW YORK, Jan 23 – Biobase, the Braunschweig, Germany-based developer of the Transfac database of transcription factors, is now planning to ...

#28. TRANSFAC

Transfac is the transcription factor binding site database. It is available by anonymous FTP. Unpacking the distribution reveals a file called site.dat. This is ...

#29. TRANSFAC® database and its applications - Bilibili

TRANSFAC ® database and its applications · Juicebox on the Web Tutorial Part 3: Comparing Maps · Tutorial video for Juicebox Assembly Tools.

#30. BIOBASE Knowledge Library: Featuring TRANSFAC & ExPlain

BKL is a Web-based bioinformatics suite offering three databases and two DNA sequence analysis tools. DATABASES You can search these databases for genes or ...

#31. Measuring similarities between transcription factor binding sites

Databases. A commonly used database of experimentally verified transcription factor binding sites is Transfac [3]. The release from May 2004 ...

#32. TRANSFAC®

The TRANSFAC® Database. Dating back as early as 1988, when the first data collection of transcription factors (TFs) and their binding sites ...

#33. TRANSFAC

The TRANSFAC database contains experimentally determined transcription factor binding sites, and is a rich source of information for those ...

#34. Transcription factor database extended: Trends in Genetics

The TRANSFAC database of transcription factors (http://transfac.gbf.de/TRANSFAC/) is now to include genetic variance data, enabling researchers to model the ...

#35. TRANSFAC®: transcriptional regulation, from patterns to ...

The TRANSFAC database on eukaryotic transcriptional regulation, comprising data on transcription factors, their target genes and regulatory binding sites, ...

#36. SciCrunch | Research Resource Resolver

The search algorithm used for the database search is the BLAST algorithm. * TfBlast 0.1: Search Tool for Sequence Search in the TRANSFAC Factor Table. SbBlast ...

#37. Bioinformatics Software: geneXplain - Research Guides

TRANSFAC database covers the most comprehensive transcription regulation information, including experimentally validated transcription factor binding site, ...

#38. Edgar Wingender

Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. T Heinemeyer, E Wingender, I Reuter, H Hermjakob, AE Kel, OV Kel, ... Nucleic acids research ...

#39. tfscan - EMBOSS - Bioinformatics

Transfac database data file (optional). Use one of the following two fields: To access a standard EMBOSS data file, enter the name here:

#40. Increasing Coverage of Transcription Factor Position ...

The JASPAR and TRANSFAC databases initially contained PWMs from 124 ... is possible through domain-level mappings for the open-access JASPAR database.

#41. HMR Conserved Transcription Factor Binding Sites (V$ ...

The score and threshold are computed with the Transfac Matrix Database (v7.0) created by Biobase. The data are purely computational, and as such not all ...

#42. Predicting regulatory elements in repetitive sequences ...

in databases. TRANSFAC (Heinemeyer et al. 1998;. Heinemeyer et al. 1999) is the most complete and well maintained database for transcription factor binding ...

#43. Description

Description. This track shows statistically significant matches between the human genome and motifs from the TRANSFAC 10.2 motif database.

#44. Update Log for Cis-BP

We have updated the motif sets to use the latest database builds for UNIPROBE, Transfac, JASPAR, and HOCOMOCO. Build 1.02 This build adds PBM experiments for ...

#45. rVISTA for comparative sequence-based discovery of ...

1998) that are compiled in various databases such as the. TRANSFAC ... TRANSFAC database, and independently locates all TFBS matches in the orthologous.

#46. 使用千人基因體與台灣個人基因體資料探討不同人種之轉錄 ...

This thesis integrates the data from 1000 Genome project, Taiwan biobank, and the TRANSFAC database to discover the genomic variants within TFBSs by ...

#47. Human Genome Project Information Archive 1990–2003

TRANSFAC Database. The TRANSFAC database [http://www.gene-regulation.com/pub/databases.html] compiles data about gene regulatory DNA sequences ...

#48. Software & Services

TFBS defined in the TRANSFAC database are used to construct specific binding site weight matrices for TFBS prediction. The user can inspect the result of ...

#49. ABS: a database of Annotated regulatory Binding Sites ...

TRANSFAC predictions; This is a directory that contains the computational predictions on each promoter of the ABS database.

#50. Improvement of TRANSFAC matrices using multiple local ...

constructing Position-Specific Weight Matrices (PWM) based on the Transcription Factor Binding Site (TFBS) data provide by the TRANSFAC database, and the ...

#51. 靈長類物種間啟動子推測性調控因子之比較

以多重序列比對次相似區結合TRANSFAC資料庫方法，找出推測性調控序列中，顯示CREB, SRF, IRF-2, c-Myb靈長序列偏好，可得到從JASPAR脊椎動物轉錄序列資料庫類似序列 ...

#52. Transcription factor

PlnTFDB - Plant Transcriptional Factor Database - allows BLAST searching ... TRANSFAC -offers academic and non-profit organizations free access to TRANSFAC® ...

#53. In Silico Identification of Regulatory Elements in Promoters

TRANSFAC database is composed of six tables SITE, GENE, FACTOR, CELL, CLASS and MATRIX. GENE table gives a short explanation of the gene where a site (or ...

#54. Chip-seq Data Analysis (part-2) SNAIL-1 - Facebook

TRANSFAC database. In Part-1 of this series analysis of ChIP-seq data publicly available in GSE127183 is presented. This ChIP- ...

#55. Laboratoires Fournier Licenses Gene Regulation Database

The Transfac database contains information on over 8,700 transcription factors, their binding sites and derived nucleotide distribution ...

#56. Sequence Analysis/Transcriptional Factor Binding Site ...

TFBS defined in the TRANSFAC database are used to construct specific binding site weight matrices for TFBS prediction. The user can inspect the result of ...

#57. TRANSFAC(R): transcriptional regulation, from patterns to ...

The TRANSFAC 1 database on eukaryotic transcriptional regulation, comprising data on transcription factors, their target genes and regulatory binding sites, ...

#58. Reliable prediction of transcription factor binding sites by ...

... Kyoto Encyclopedia of Genes and Genomes database (26) and downloaded ... motifs in the transfac database (31) for each of the 53 TFs.

#59. ENCODE-motifs

Description: A database that uncovers the molecular basis of TF binding in the human ... curated from TRANSFAC, Jaspar, and Protein Binding Microarray (PBM) ...

#60. a database of Arabidopsis transcription factors - DATF

TRANSFAC (Matys et al., 2003) database contains more inform- ation on transcription factors than the above three lists do, but the.

#61. MSigDB v3.0 Release Notes

4 TRANSFAC database. We then generated the motif gene sets consisting of the inferred target genes for each motif. Every such set consists of ...

#62. Systems Biology and Regulatory Genomics: Joint Annual RECOMB ...

We downloaded 108 Homo sapiens PSSMs freely distributed from TRANSFAC database in March 2005. We then compute putative TFBS in all promoter sequences ...

#63. Computational Medicine: Tools and Challenges

... the JASPAR and the TRANSFAC databases. http://genome.ufl.edu/ mapper MAPPER 2 ... TRANSFAC and the regulatory element database http://pupasuite.bioinfo.

#64. Biocomputing '97 - Proceedings Of The Pacific Symposium

5 Biological applications Using pattern search tools with the sequence elements and IUPAC consensus strings compiled in the TRANSFAC database, we identified ...

#65. Advances In Genomic Sequence Analysis And Pattern Discovery

(2005) Drosophila DNase I footprint database: A systematic genome annotation ... ChIP-seq data (motif0) compared with close hits from the TRANSFAC database.

#66. Biocomputing 2013 - Proceedings Of The Pacific Symposium

... motif information in the TRANSFAC database.24 Instead of considering one or two TFs at a time, ChIPModule can consider any number of TFs simultaneously.

#67. Regulatory Genomics: RECOMB 2004 International Workshop, RRG ...

We determined putative binding sites in the conserved regions (as defined in [3]) by screening for known motifs, which were taken from the TRANSFAC database ...

#68. Concepts in Biotechnology: History, Science and Business

... transfer TRANSFAC database transformation transgenic animals –analyse complextissue development, multicoloured fluorescent tags – conditionally induced ...

#69. Algorithms in Bioinformatics: Third International Workshop, ...

A systematic study of all transcription factor binding site profiles of the TRANSFAC database is in preparation [7]. For the most powerful test, ...

#70. A statistical analysis of the TRANSFAC database

A statistical analysis of the TRANSFAC database. Authors: Fogel Gary B Weekes Dana G Varga Gabor Dow Ernst R Craven Andrew M Harlow Harry B Su Eric W Onyia ...

#71. Basic Bioinformatics - 第 92 頁 - Google 圖書結果

... the HIV sequence database and IMGT, the immunogenetics database. Others are focusing on particular features, such as TRANSFAC for transcription factor ...

#72. NIH Licenses BIOBASE's TRANSFAC And PROTEOME ...

BIOBASE, a provider of expert-maintained biological databases and ... TRANSFAC is the eukaryotic gene regulation database that contains ...

#73. a database of transcription factors with annotated cis ...

Euler diagrams representing redundancy for DNA motifs (A, B and. C) and TF sequences (D, E and F) annotated in footprintDB, TRANSFAC and JASPAR CORE databases.

#74. NIH Licenses Biobase's Transfac® and Proteome™ ...

Under the terms, NIH extends its subscription for Biobase's Transfac database and expands its portfolio to include the Proteome databases. "We ...

#75. TransFac db - GeneTools

Transcription Factors Database. CORG · http://corg.molgen.mpg.de/ ... TRANSFAC · http://www.gene-regulation.com/pub/databases.html.

#76. TRANSFAC: Promoter selection and its impact on differential ...

TRANSFAC : Promoter selection and its impact on differential gene expression analysis. 1,938 views. November 20, 2015. Presenter: Dr. Alexander Kaplun

#77. TcoF - Dragon database of transcription co-factors and ...

Additionally a human protein can enter into our set of TFs if it is contained in TRANSFAC and passed a manual curation step. In total there are only 70 ...

#78. Pfms

... MEME and TRANSFAC matrix format for six taxonomic groups. ... a database of all recipient agencies, integration with core banking solution of banks ...